Changes in Neuronvisio

0.8.2.dev –

• Fixed paver minilib, missing from the tarball
• Added one new model to the ModelDB.xml

0.8.2 – 23 Apr 2012

• Added two new model to ModelDB.xml
• Introduced a new method to assign a color to more than one sections from the console
• Added the apptools patched version as explicit dependency until it’s not released officially.

0.8.1 – 19 March 2012

• Added new models on the ModelDB.xml
• Closed #45
• Easy function to export a video as a stack of screenshots
• Updated the docs to work witht the latest pyqt
• Geometry node in the HDF is directly a NeuroML string and not wrapped in a list

0.8.0 – 15 Feb 2012

• New repo layout
• Ported to Mayavi 4.1.1.dev
• Closed #31
• Reorganized controls method in alphabetical order.
• Animation set true when simulation is launched.
• Fixed a vectors handling if no values present.
• Updated the doc for Mayavi 4.0.0
• Load hoc or hdf with the same method
• Added new models from ModelDB
• User Interface improvement
• Closed #37
• Closed #32
• Closed #34
• Improved nrnvisio.py to integrate seamlessy with IPython session, or create a new one on the fly
• Automatic handling of Mayavi installation through pip.

0.7.3 – 24 Nov 2011

• Inserted how to configure ipython with the pylab and Q4Agg support in the doc
• Selected section is now stored and used if the vector are created only for one sec
• Inserted two new models on the ModelDb.xml. Fix #30.
• Included the ModelDB.xml in the package

0.7.2 – 8 Nov 2011

• Inserted modeldb in the pavement.

0.7.1 – 8 Nov 2011

• fixed the name of the exectable on the setup file

0.7.0 – 3 Nov 2011

• Added a new tab to have a ModelDb explorer inside Neuronvisio
• Integrate the ability to download and extract a NEURON model from ModelDb
• Ability to load the model directly from Neuronvisio
• Used the logging python system through the package
• Updated the docs to explain the ModelDb integration.

0.6.2 – 16 Jun 2011

• New API to select sections directly from the commandline (controls.select_sections())
• Animation Timeliner set up only if simulation has ran or be reloaded.

0.6.1 – 9 Jun 2011

• Animation ported to the new infrastructure.
• Updated the requirements with setuptools (needed for paver)
• Animation timeline accept an arbitrary time and display it on the visio window.

0.6.0 – 10 May 2011

• Added the function to plot a 3D plot to the manager (manager.plot3D)
• Animation can will be enabled if any simulation is ran, either from the gui or the code.
• Completely rewrote the visualization method. Now completely integrates in the mayavi pipelines, therefore axes and other modules/filters can be added at will
• Now it’s faster. A lot faster
• All the segments are plotted, not only the section. This is extremely helpful with geometrical reconstruct neurons and networks.
• Updated the docs and the screenshots.

0.5.2 – 26 Jan 2011

• Updated the version recall to GitPython 0.3.1 (used only if present!)
• HocVector into NumpyArray for saving with swap in place, to reduce overhead
• Restructured the package for an easier installation
• Added the possibility to build documentation offline

0.5.1 - 23 Nov 2010

• Fixed the picking of the cylinder. Possible to select a cylinder clicking anywhere.
• Possibility to plot points instead of a lines
• BaseREf class are discriminated through the group id and not any more on class base.

0.5.0 - 19 Jun 2010

• Closed #16
• Fixed some typos on the docs
• Mechanisms are shown on the info tab
• Refactored code for extensibility
• Storage moved to a hdf file.
• Extensibility to other kind of variables, not only vectors

0.4.4 - 1 Apr 2010

• Fixed the name on the README
• Treeview updated everytime a database is loaded.

0.4.3 - 2 Mar 2010

• Info sections updated
• Update the docs and website

0.4.2 - 18 Feb 2010

• Added simulation saving abilities.
• Updated the doc

0.4.1 - 28 Jan 2010

• Closed #13
• Introduced a tab to retrieve info on the section

0.4.0 - 19 Jan 2010

• Remplemented using Mayavi2 and Qt4 for better performance and better usability.
• Cleanup and refactoring of the code.
• Closed #11, #12, #15

0.3.5 - 20 Nov 2009

• Using sphinx for the doc
• Using paver for deployment
• python egg and easy install support
• User manuel available in pdf format

0.3.4 - 15 Sep 2009

• Changed the way the module is imported to allow other program to use the manager as a storing objects for results.

0.3.3 - 3 Sep 2009

• Integrated the pylab interface using the GTK backend provided by pylab. It is possible to zoom and navigate the graph with the pylab tools.
• It is now possible to decide in which figure to plot, using the current figure selector.

0.3.22 - 31 Jul 2009

• Closed bug #10
• Changed the name of the module from nrnVisio to nrnvisio to be python standard compliant.
• Manager being transformed into a library (WIP)

0.3.21 - 20 Jul 2009

• Better handling of the pick section routine
• Changed the examples to use the create statement for hoc, to have a proper name of the section also in python.
• Modified the GUI to handle a runtime change of a section. The model is redrawn completely, the zoom is conserved.

0.3.2 - 20 Jul 2009

Bug Release. Closed Bug #9

0.3.1 - 18 Jul 2009

Bug Release.

0.3.0 - 14 Jul 2009

New Features

• Stop Button on the animation Control
• Better handling on the timeline updating routine.

BUGFixes

• Closed bug #8
• Closed bug #3

0.2.0 - 6 Jul 2009

New Features

Some new features has been introduced:

• User defined color. The user can now change the colors of the model for a better contrast.
• Info tab. Reports the properties of the selected section.

BUGFixes

• Closed bug #4
• Closed bug #5
• Closed bug #6

0.1.0 - 30 Jun 2009

Fist public release.

Features

• 3D visualization of the model with the possibility to change it runtime
• Creation of vectors to record any variable present in the section
• Pylab integration to plot directly the result of the simulation
• Explore of the timecourse of any variable among time using a color coded scale in the 3d representation
• the GUI runs in its own thread so it’s possible to use the console to modify/interact with the model.